usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 70.7999259259259 59.801 18.5732222222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1153 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 674 Number of spheres polar: 207, nonpolar: 291, out of current total: 674 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 60.80771 80.69472 49.80315 69.76196 8.64696 27.81201 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 238 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 196 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 175 Spheres center of coords (x y z): 68.0862142857143 62.1697768 19.0650888 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.69058756044778 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 27