usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 1.63941666666667 63.8445416666667 8.648625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1454 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 848 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 844 Number of spheres polar: 296, nonpolar: 343, out of current total: 844 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.27522 11.44647 53.85400 73.84097 -1.33026 18.62881 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 182 Spheres center of coords (x y z): 2.64120516483516 60.6224929120879 8.98899626373627 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.8432132209168 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24