usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 1.63941666666667 63.8445416666667 8.648625
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1454
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 848
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 844
Number of spheres polar: 296, nonpolar: 343, out of current total: 844
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.27522 11.44647 53.85400 73.84097 -1.33026 18.62881
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 489
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 414
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 347
Spheres center of coords (x y z): 2.49398463976945 61.5454102017291 8.25667207492795
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.11994791829786
Final number of output spheres is: 60
Number of polar spheres: 35
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 24