usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 13.2232857142857 -8.59121428571429 10.952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1116 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 768 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 768 Number of spheres polar: 350, nonpolar: 327, out of current total: 768 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.30831 23.10919 -18.58119 1.37127 0.95361 20.94719 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 376 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 319 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): 12.4545569921875 -7.83685078125 7.6740146484375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44473832693977 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 14