usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 29.1471818181818 6.93804545454545 63.9833636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1378 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804 Number of spheres polar: 286, nonpolar: 347, out of current total: 804 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.29100 39.13542 -2.95853 16.92668 54.01223 73.96383 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 460 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 398 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 371 Spheres center of coords (x y z): 29.6569925606469 9.13326115902965 64.0501109973045 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.3683362696026 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22