usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 29.9515 7.47116666666667 64.3522777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1314 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 833 Number of spheres polar: 296, nonpolar: 312, out of current total: 833 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.96025 39.88480 -2.51185 17.42975 54.36681 74.30796 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 472 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 416 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 384 Spheres center of coords (x y z): 30.3415107291667 9.14312895833333 64.4869879166667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.13862415718244 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18