usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 27.6989615384615 6.78557692307692 63.4400384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1387 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 831 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 831 Number of spheres polar: 313, nonpolar: 317, out of current total: 831 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.83171 37.69812 -3.19516 16.74789 53.50931 73.43485 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 220 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 29.3253925966851 10.2483140883978 63.7064620441989 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.37201961912135 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26