usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 27.47168 6.85444 63.43256
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1761
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 973
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 970
Number of spheres polar: 343, nonpolar: 441, out of current total: 970
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.49397 37.46664 -3.09321 16.83644 53.43399 73.26910
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 524
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 446
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 391
Spheres center of coords (x y z): 27.2663957033248 9.86716907928389 62.1035640920717
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.32048844058163
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 25