usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 27.9710625 6.288625 63.7869375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1242 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 756 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 754 Number of spheres polar: 232, nonpolar: 359, out of current total: 754 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.15412 37.92060 -3.67710 16.26645 53.78870 73.75648 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 257 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 220 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 29.6799081395349 10.6136872674419 63.3002687209302 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87855634191693 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 16