usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 27.3590434782609 7.37395652173913 63.3282608695652 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1534 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 889 Number of spheres polar: 323, nonpolar: 356, out of current total: 889 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.43700 37.34253 -2.62375 17.36983 53.33732 73.32370 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 513 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 440 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 365 Spheres center of coords (x y z): 27.7772399726028 11.1470314246575 62.2122937534247 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.11723301995236 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 23