usefragsph not on
There are 33 ligand heavy atoms
Ligand center of coords (x y z): 1.95139393939394 27.5528787878788 8.7980606060606
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1848
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 856
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 856
Number of spheres polar: 248, nonpolar: 378, out of current total: 856
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.04308 11.93049 17.59638 37.54378 -1.10644 18.79785
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 421
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 381
Spheres center of coords (x y z): 0.381355590551181 25.5582137532808 10.3626962204724
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.03931990460875
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 33