usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -10.2935588235294 203.983147647059 113.135647058824 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1552 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746 Number of spheres polar: 206, nonpolar: 335, out of current total: 746 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.25602 -0.32488 194.20134 212.40085 103.16350 123.12099 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 434 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 361 Spheres center of coords (x y z): -9.0495275900277 204.179205900277 115.29876434903 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.51130277063641 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 34