usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -11.6027083333333 205.62441625 113.069416666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1249 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 681 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 681 Number of spheres polar: 184, nonpolar: 308, out of current total: 681 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.55011 -1.61038 195.79443 215.51907 103.07999 123.00465 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 205 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 187 Spheres center of coords (x y z): -10.3369572727273 204.379748342246 116.606403903743 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07541106084238 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 24