usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -12.4253076923077 208.087076538462 114.136730769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1544 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 259, nonpolar: 342, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -22.22935 -2.43007 198.14253 215.52272 104.23195 124.11104 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): -12.207314212963 207.002256388889 117.693276574074 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.22076832267692 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26