usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): -10.9685172413793 207.233308965517 113.802482758621 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1515 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 774 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 227, nonpolar: 348, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.96765 -0.97497 197.33203 214.23180 103.80267 123.76535 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 421 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 361 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 342 Spheres center of coords (x y z): -10.3407394444445 206.493409473684 116.345393157895 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.62835764090783 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 29