usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 2.022 49.0549583333333 2.38745833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1319 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 734 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 246, nonpolar: 335, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.84120 12.00927 39.06187 59.05171 -7.59146 12.35210 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): -1.57950849462366 47.4333206451612 3.16345043010753 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.233423026773 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 24