usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -6.99263636363636 20.8808181818182 -22.0883181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1254 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 841 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 841 Number of spheres polar: 214, nonpolar: 433, out of current total: 841 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.96782 3.00663 10.91769 30.84910 -32.06916 -12.09281 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 478 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 405 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 369 Spheres center of coords (x y z): -3.16589650406504 20.4625691327913 -20.5884528184282 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.7025142877501 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 22