usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -6.31269230769231 -22.5781538461538 23.6154230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1198 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 768 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 768 Number of spheres polar: 270, nonpolar: 343, out of current total: 768 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.28072 3.56939 -32.50500 -12.76487 13.62864 33.58400 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 266 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): -4.18150432835821 -24.3380543283582 24.4507847761194 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9764106697872 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26