usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): -11.3212777777778 206.537583333333 114.6525 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1617 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 830 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 820 Number of spheres polar: 223, nonpolar: 342, out of current total: 820 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.29173 -1.32693 196.68938 216.42950 104.81841 124.58289 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 288 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 245 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 232 Spheres center of coords (x y z): -10.6936774568966 206.356320517241 116.950215387931 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.29690643557945 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 36