usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 0.73278125 29.13675 9.16640625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1056 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1056 Number of spheres polar: 313, nonpolar: 511, out of current total: 1056 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.23361 10.72722 19.22000 39.11800 -0.80304 19.12794 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 566 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 495 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 445 Spheres center of coords (x y z): 0.248241865168539 26.8909178202247 10.2986601123596 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.78141571412295 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32