usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): -0.13659375 92.6818125 29.9183125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1632 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 856 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 856 Number of spheres polar: 262, nonpolar: 377, out of current total: 856 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.06989 8.84764 82.74477 102.67216 19.92235 39.89640 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 399 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 370 Spheres center of coords (x y z): -1.64699835135135 92.9062347297297 26.814774 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54729656289144 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 32