usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 1.1185 -7.81939285714286 -27.9954642857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1590 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 912 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 912 Number of spheres polar: 290, nonpolar: 421, out of current total: 912 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.88074 11.10393 -17.78792 2.10698 -37.97954 -17.99609 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 290 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): 2.82638106598985 -11.1728395431472 -27.8387535025381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.39832700643052 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28