usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 64.7605294117647 80.5417647058824 -84.826 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1489 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879 Number of spheres polar: 303, nonpolar: 431, out of current total: 879 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 54.84645 74.61642 70.61607 90.51385 -94.77358 -74.84820 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 466 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 398 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 356 Spheres center of coords (x y z): 62.88023 81.9411667977528 -82.0056411797753 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.96977861997577 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17