usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 122.851523809524 99.8865238095238 29.6919047619048 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1535 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 669 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668 Number of spheres polar: 125, nonpolar: 437, out of current total: 668 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 112.85413 132.72920 90.04444 109.83732 19.70081 39.45794 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 234 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 194 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 121.371719651163 100.865884651163 29.2770170348837 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.55580553680492 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 21