usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -92.7793888888889 80.2951666666667 85.2745555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1543 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 821 Number of spheres polar: 309, nonpolar: 389, out of current total: 821 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -99.98795 -82.78389 70.29582 90.28451 75.31362 95.27200 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): -90.5693331547619 81.2078803571428 81.3646505952381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45603669182687 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18