name of input pdb file: rec.crg name of output contact grid file: solvmap_sev atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.400000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): -112.6920 -116.7190 -0.4070000 -63.53800 -79.75700 49.43500 box minimum and maximum x y z (A): -108.5280 -0.7720000 -8.300000 -58.52800 49.22700 10.11700 dielectric grid expansion size (points/edge) 15 20 0 0 0 20 dielectric grid minimum and maximum x y z (A): -116.0280 -10.77200 -8.300000 -58.52800 49.22700 20.11700 solvation grid x, y, z dimensions: 100 99 36 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 37 the way there! 2 / 37 the way there! 3 / 37 the way there! 4 / 37 the way there! 5 / 37 the way there! 6 / 37 the way there! 7 / 37 the way there! 8 / 37 the way there! 9 / 37 the way there! 10 / 37 the way there! 11 / 37 the way there! 12 / 37 the way there! 13 / 37 the way there! 14 / 37 the way there! 15 / 37 the way there! 16 / 37 the way there! 17 / 37 the way there! 18 / 37 the way there! 19 / 37 the way there! 20 / 37 the way there! 21 / 37 the way there! 22 / 37 the way there! 23 / 37 the way there! 24 / 37 the way there! 25 / 37 the way there! 26 / 37 the way there! 27 / 37 the way there! 28 / 37 the way there! 29 / 37 the way there! 30 / 37 the way there! 31 / 37 the way there! 32 / 37 the way there! 33 / 37 the way there! 34 / 37 the way there! 35 / 37 the way there! 36 / 37 the way there! 37 / 37 the way there! successful completion elapsed time (sec): 92.2000 Sun Oct 9 02:17:29 PDT 2011 rec.crg solvmap_sev 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.4 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom