There are 14 ligand heavy atoms Ligand center of coords (x y z): -3.96028571428571 -12.1099285714286 -17.9162857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 5808 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 4605 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 4605 Number of spheres polar: 1942, nonpolar: 2102, out of current total: 4605 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.56100 8.03780 -24.10660 -0.11220 -26.52200 -5.97720 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 717 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 444 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 423 Spheres center of coords (x y z): 0.0384661938534281 -12.2244193853428 -19.9667607565012 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.7709586259862 Final number of output spheres is: 120 Number of polar spheres: 29 Number of nonpolar spheres: 87 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 14