usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): -24.8067142857143 59.9998571428571 50.5665714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 330 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 237 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 236 Number of spheres polar: 45, nonpolar: 164, out of current total: 236 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -33.36600 -14.89834 50.72763 69.94328 41.77194 59.69294 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 84 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 73 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 50 Spheres center of coords (x y z): -25.528438 58.2539308 50.229934 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.06014216201894 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 14