usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 6.10173684210526 1.325 57.5671052631579
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1896
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1230
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1230
Number of spheres polar: 367, nonpolar: 719, out of current total: 1230
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.88929 16.09520 -8.66640 11.28302 47.57155 64.81879
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 571
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 492
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 473
Spheres center of coords (x y z): 7.64333841437631 0.826649260042284 54.1725176744185
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.70616411984455
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 19