usefragsph not on
There are 38 ligand heavy atoms
Ligand center of coords (x y z): 28.1225789473684 -6.06502631578947 -12.0469473684211
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1153
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 836
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 834
Number of spheres polar: 228, nonpolar: 465, out of current total: 834
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.31170 38.10410 -16.00490 3.88584 -22.02845 -2.66891
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 443
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 378
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 354
Spheres center of coords (x y z): 29.5267624293785 -6.98732152542373 -13.4479548587571
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.8943939396922
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 38