usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): -2.96641025641026 17.2925384615385 13.8906153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 961 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 685 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 685 Number of spheres polar: 212, nonpolar: 402, out of current total: 685 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.92875 6.46297 7.19200 27.28524 5.09150 23.80228 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 343 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 297 Spheres center of coords (x y z): -4.65446545454545 17.2400860942761 14.7233721212121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.26668014718118 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 39