usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): -20.3861739130435 87.353652173913 38.8589565217391 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1815 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969 Number of spheres polar: 270, nonpolar: 547, out of current total: 969 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -30.32660 -10.41230 77.58644 97.25182 28.90168 48.85306 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 475 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 398 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 326 Spheres center of coords (x y z): -17.4827052760736 85.7794846625766 35.2164942331288 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.31556166734552 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 23