usefragsph not on
There are 18 ligand heavy atoms
Ligand center of coords (x y z): 8.63638888888889 33.1419444444444 -1.90294444444444
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1326
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 778
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 778
Number of spheres polar: 188, nonpolar: 518, out of current total: 778
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.34528 18.61889 24.04490 43.11592 -11.78566 8.05879
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 357
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 315
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 274
Spheres center of coords (x y z): 7.51070521897811 34.8293334671533 -4.85757638686131
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.84242000712504
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 18