Distance from surface specified: 1.80 There are 18 ligand heavy atoms Ligand center of coords (x y z): 8.63638888888889 33.1419444444444 -1.90294444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14018 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10732 WARNING: removing a crystallographic sphere that is distance 1.75232502692851 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10731 Number of spheres polar: 4457, nonpolar: 5424, out of current total: 10731 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -5.25380 22.63040 19.17080 47.13800 -15.89920 12.08840 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1111 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 525 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 469 Spheres center of coords (x y z): 7.57894925373134 39.2775206823028 -1.12553731343284 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.2934805570701 Final number of output spheres is: 200 Number of polar spheres: 66 Number of nonpolar spheres: 127 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17