There are 18 ligand heavy atoms Ligand center of coords (x y z): 8.63638888888889 33.1419444444444 -1.90294444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14018 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8982 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8982 Number of spheres polar: 3753, nonpolar: 4495, out of current total: 8982 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.36280 20.63520 21.20420 45.14120 -13.81200 10.08820 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 989 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 382 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): 5.32180802469136 37.261537654321 -1.95846172839506 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.0949673045374 Final number of output spheres is: 120 Number of polar spheres: 24 Number of nonpolar spheres: 92 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18