usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 75.1605217391304 84.1428260869565 5.66104347826087 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 731 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 393 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 384 Number of spheres polar: 97, nonpolar: 187, out of current total: 384 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 65.30629 81.87202 74.36217 94.14100 -4.31028 15.63817 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 191 Spheres center of coords (x y z): 73.9792728272251 82.0204671204189 5.82915272251309 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87761738223552 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 25 Final number of spheres that are from crystallographic ligand: 23