usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 58.5204705882353 82.3300588235294 10.4861764705882 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1620 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1112 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1112 Number of spheres polar: 229, nonpolar: 681, out of current total: 1112 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 48.72154 68.37503 72.40520 92.31190 1.97661 20.29968 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 340 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 281 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 272 Spheres center of coords (x y z): 58.4331366544117 82.9131025735294 11.1585847426471 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.94142854533896 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 17