usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 58.5204705882353 82.3300588235294 10.4861764705882 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1620 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1112 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1112 Number of spheres polar: 229, nonpolar: 681, out of current total: 1112 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 48.72154 68.37503 72.40520 92.31190 1.97661 20.29968 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 578 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 500 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 488 Spheres center of coords (x y z): 58.3064584221312 82.8323543032787 11.1276621311475 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08678641435827 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 17