There are 50 ligand heavy atoms Ligand center of coords (x y z): 36.68594 -15.69362 29.69054 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19014 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10429 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10429 Number of spheres polar: 5072, nonpolar: 4304, out of current total: 10429 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.68740 48.68340 -27.68960 -3.69860 17.83220 41.68780 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1110 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 447 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 327 Spheres center of coords (x y z): 38.6100892966361 -13.0153321100917 29.3405547400612 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67329782967153 Final number of output spheres is: 120 Number of polar spheres: 44 Number of nonpolar spheres: 61 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 50