usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 7.13729166666667 28.2662916666667 7.553375
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1082
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 659
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 654
Number of spheres polar: 200, nonpolar: 315, out of current total: 654
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.71371 16.73816 18.43099 38.23487 -2.44491 17.53671
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 218
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 131
Spheres center of coords (x y z): 6.07461633587787 29.8868051908397 7.90178106870229
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.76147155460278
Final number of output spheres is: 45
Number of polar spheres: 14
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 24