usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): 5.78268 27.77792 6.43264
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1193
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 750
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747
Number of spheres polar: 231, nonpolar: 319, out of current total: 747
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.04941 15.57162 17.83900 37.74402 -3.54324 16.41579
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 210
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 173
Spheres center of coords (x y z): 3.59455358381503 31.3555310404624 5.15834554913295
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.75920323849277
Final number of output spheres is: 45
Number of polar spheres: 15
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 25