usefragsph not on
There are 38 ligand heavy atoms
Ligand center of coords (x y z): 5.0406052631579 28.7955789473684 6.1385
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1494
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 798
Number of spheres polar: 317, nonpolar: 327, out of current total: 798
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.78858 14.87786 18.85200 38.78009 -3.84901 16.12482
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 438
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 360
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 318
Spheres center of coords (x y z): 4.37314242138365 30.4120551572327 4.7946548427673
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.79443516736626
Final number of output spheres is: 60
Number of polar spheres: 15
Number of nonpolar spheres: 39
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 38