usefragsph not on
There are 36 ligand heavy atoms
Ligand center of coords (x y z): 5.30283333333333 27.6114166666667 6.51175
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1210
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 603
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 595
Number of spheres polar: 134, nonpolar: 291, out of current total: 595
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.44596 15.01247 17.63400 37.60923 -3.42139 16.47883
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 247
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 209
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 177
Spheres center of coords (x y z): 3.2383413559322 31.179467740113 4.89292598870056
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.13733594710753
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 36