usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -4.59657575757576 18.6466363636364 -17.0758787878788 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 857 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 857 Number of spheres polar: 326, nonpolar: 408, out of current total: 857 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.56432 5.38927 8.68500 28.61785 -25.80118 -7.55260 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 427 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 347 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 324 Spheres center of coords (x y z): -5.64053719135802 15.9804521604938 -14.7885187654321 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.04007223779959 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 33