usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 7.05103571428572 30.2150357142857 9.30185714285714
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1277
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 607
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 592
Number of spheres polar: 132, nonpolar: 285, out of current total: 592
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.84274 16.79881 21.40835 40.19712 -0.31513 19.23125
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 161
Spheres center of coords (x y z): 4.2633149068323 32.9172493167702 9.9502347204969
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.1617750919627
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 28