Distance from surface specified: 1.80 There are 28 ligand heavy atoms Ligand center of coords (x y z): 7.05103571428572 30.2150357142857 9.30185714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12838 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 11459 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 11459 Number of spheres polar: 5378, nonpolar: 4887, out of current total: 11459 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.93600 21.03940 16.22140 44.17060 -4.69480 22.89700 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1380 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 839 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 839 Spheres center of coords (x y z): 5.85696901072705 31.4812164481526 11.0635904648391 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.7819731673913 Final number of output spheres is: 200 Number of polar spheres: 111 Number of nonpolar spheres: 68 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 28