There are 28 ligand heavy atoms
Ligand center of coords (x y z): 7.05103571428572 30.2150357142857 9.30185714285714
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 12838
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8639
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8639
Number of spheres polar: 4048, nonpolar: 3796, out of current total: 8639
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.93940 19.04800 18.22800 42.21040 -2.69760 21.29980
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1261
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 671
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 663
Spheres center of coords (x y z): 6.30369683257918 32.1848730015083 11.0648108597285
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 10.2137292634717
Final number of output spheres is: 120
Number of polar spheres: 54
Number of nonpolar spheres: 57
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 28