DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-4-22.c.bkslab.org 10-Apr-12 19:27:55 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../../lig/db.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1637370 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -7.247999 8.238998 -12.24900 grid max 26.75200 52.73900 24.25100 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 34 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 14.54989 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 KRJ_923_3 6997 1134689 28 224 755.9 4.38 E KRJ_923_3 4 -5.78 -32.18 8.89 -3.49 -32.55 2 KRJ_923_3 2187 456990 28 22 740.5 1.88 E KRJ_923_3 2 -14.40 -12.50 8.84 -0.79 -18.85 3 KRJ_923_3 4676 372984 28 23 611.3 1.60 E KRJ_923_3 2 -5.78 -27.97 7.45 -3.33 -29.62 4 KRJ_923_3 1742 245521 28 14 916.4 1.71 E KRJ_923_3 2 -6.03 -33.40 10.79 -3.17 -31.82 5 KRJ_923_3 6997 1133151 28 192 978.2 4.29 E KRJ_923_3 4 -6.53 -33.88 10.65 -3.41 -33.16 6 KRJ_923_3 2187 436801 28 26 692.0 1.81 E KRJ_923_3 2 -4.32 -22.42 7.87 -3.25 -22.13 7 KRJ_923_3 4692 346474 28 30 296.1 1.49 E KRJ_923_3 2 -5.73 -30.70 8.61 -3.32 -31.14 8 KRJ_923_3 1742 241683 28 12 518.0 1.69 E KRJ_923_3 2 -6.56 -31.39 8.99 -3.47 -32.42 9 KRJ_923_3 6997 1132972 28 360 1099.9 4.27 E KRJ_923_3 4 -6.71 -33.31 8.82 -3.51 -34.71 10 KRJ_923_3 2201 489901 28 27 826.6 1.89 E KRJ_923_3 2 -4.87 -28.41 8.12 -3.12 -28.29 11 KRJ_923_3 4679 311067 28 32 60.4 1.30 E KRJ_923_3 2 -6.09 -20.33 8.16 -2.28 -20.54 12 KRJ_923_3 1742 231926 28 12 274.1 1.52 E KRJ_923_3 2 -6.64 -32.32 9.31 -3.43 -33.08 13 KRJ_923_3 6997 1162192 28 180 1047.4 4.15 E KRJ_923_3 4 -6.87 -32.22 8.93 -3.48 -33.64 14 KRJ_923_3 2200 452044 28 16 952.0 1.76 E KRJ_923_3 2 -6.91 -26.80 9.47 -3.52 -27.76 15 KRJ_923_3 4699 307707 28 24 286.2 1.24 E KRJ_923_3 2 -5.20 -31.07 8.75 -3.21 -30.73 16 KRJ_923_3 1742 253018 28 12 807.3 1.64 E KRJ_923_3 2 -6.31 -34.05 10.32 -3.31 -33.35 17 KRJ_923_3 6997 1117944 28 224 1145.4 4.05 E KRJ_923_3 4 -9.56 -30.41 17.92 -3.25 -25.29 18 KRJ_923_3 2187 426633 28 22 279.5 1.82 E KRJ_923_3 2 -3.02 -17.58 8.35 -2.04 -14.29 19 KRJ_923_3 4676 332381 28 23 543.1 1.49 E KRJ_923_3 2 -10.42 -28.17 17.62 -3.29 -24.26 20 KRJ_923_3 2219 287209 28 14 791.0 2.06 E KRJ_923_3 2 -9.83 -27.81 17.86 -2.58 -22.36 21 KRJ_923_3 6997 1103371 28 192 1460.3 4.22 E KRJ_923_3 4 -9.32 -29.03 19.42 -3.26 -22.19 22 KRJ_923_3 2187 406940 28 26 252.2 1.71 E KRJ_923_3 2 -2.63 -21.33 10.15 -2.42 -16.23 23 KRJ_923_3 4692 310167 28 30 545.5 1.38 E KRJ_923_3 2 -5.98 -26.90 15.96 -2.76 -19.67 24 KRJ_923_3 2219 280790 28 12 401.8 1.96 E KRJ_923_3 2 -5.92 -26.82 15.19 -1.98 -19.52 25 KRJ_923_3 6997 1075780 28 240 1339.3 4.13 E KRJ_923_3 4 -10.43 -29.30 17.92 -3.28 -25.09 26 KRJ_923_3 2201 427776 28 24 768.0 1.84 E KRJ_923_3 2 -6.12 -25.15 16.58 -2.61 -17.30 27 KRJ_923_3 4676 289969 28 32 517.7 1.33 E KRJ_923_3 2 -9.37 -28.45 18.12 -3.14 -22.83 28 KRJ_923_3 2219 280623 28 12 701.3 1.98 E KRJ_923_3 2 -5.83 -26.94 15.28 -2.00 -19.49 29 KRJ_923_3 6997 1103860 28 144 1299.4 4.20 E KRJ_923_3 4 -8.79 -28.40 18.52 -2.98 -21.65 30 KRJ_923_3 2201 401550 28 18 888.1 1.72 E KRJ_923_3 2 -2.91 -26.16 20.20 -3.24 -12.11 31 KRJ_923_3 4693 290220 28 20 594.5 1.31 E KRJ_923_3 2 -8.73 -26.12 17.80 -3.05 -20.10 32 KRJ_923_3 2219 268650 28 12 364.2 1.92 E KRJ_923_3 2 -5.07 -29.69 16.25 -2.55 -21.06 EOF: ../../lig/db.db.gz end of file encountered total minimization steps = 1970324 for debugging, time = 75.81000 solvation corrected scores: (a) 1 KRJ_923_3 score: -34.708 nathvy = 28 nconfs = 360 2 KRJ_923_3 score: -33.639 nathvy = 28 nconfs = 180 3 KRJ_923_3 score: -33.351 nathvy = 28 nconfs = 12 4 KRJ_923_3 score: -33.163 nathvy = 28 nconfs = 192 5 KRJ_923_3 score: -33.082 nathvy = 28 nconfs = 12 6 KRJ_923_3 score: -32.548 nathvy = 28 nconfs = 224 7 KRJ_923_3 score: -32.423 nathvy = 28 nconfs = 12 8 KRJ_923_3 score: -31.822 nathvy = 28 nconfs = 14 9 KRJ_923_3 score: -31.137 nathvy = 28 nconfs = 30 10 KRJ_923_3 score: -30.730 nathvy = 28 nconfs = 24 11 KRJ_923_3 score: -29.622 nathvy = 28 nconfs = 23 12 KRJ_923_3 score: -28.287 nathvy = 28 nconfs = 27 13 KRJ_923_3 score: -27.761 nathvy = 28 nconfs = 16 14 KRJ_923_3 score: -25.294 nathvy = 28 nconfs = 224 15 KRJ_923_3 score: -25.085 nathvy = 28 nconfs = 240 16 KRJ_923_3 score: -24.261 nathvy = 28 nconfs = 23 17 KRJ_923_3 score: -22.832 nathvy = 28 nconfs = 32 18 KRJ_923_3 score: -22.363 nathvy = 28 nconfs = 14 19 KRJ_923_3 score: -22.189 nathvy = 28 nconfs = 192 20 KRJ_923_3 score: -22.128 nathvy = 28 nconfs = 26 21 KRJ_923_3 score: -21.651 nathvy = 28 nconfs = 144 22 KRJ_923_3 score: -21.059 nathvy = 28 nconfs = 12 23 KRJ_923_3 score: -20.538 nathvy = 28 nconfs = 32 24 KRJ_923_3 score: -20.097 nathvy = 28 nconfs = 20 25 KRJ_923_3 score: -19.673 nathvy = 28 nconfs = 30 26 KRJ_923_3 score: -19.524 nathvy = 28 nconfs = 12 27 KRJ_923_3 score: -19.489 nathvy = 28 nconfs = 12 28 KRJ_923_3 score: -18.851 nathvy = 28 nconfs = 22 29 KRJ_923_3 score: -17.302 nathvy = 28 nconfs = 24 30 KRJ_923_3 score: -16.229 nathvy = 28 nconfs = 26 31 KRJ_923_3 score: -14.293 nathvy = 28 nconfs = 22 32 KRJ_923_3 score: -12.106 nathvy = 28 nconfs = 18 Date and Time: 10-Apr-12 19:30:33 elapsed time (sec): 75.8700