usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 20.6099259259259 -7.97203703703704 71.0683703703704 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1976 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 798 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 798 Number of spheres polar: 239, nonpolar: 329, out of current total: 798 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.80950 30.53469 -16.46143 2.02490 61.14888 81.06233 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 467 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 415 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 397 Spheres center of coords (x y z): 18.1705804534005 -7.91365959697732 72.4416595465995 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53420859959078 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 22 Final number of spheres that are from crystallographic ligand: 27