There are 27 ligand heavy atoms Ligand center of coords (x y z): 20.6099259259259 -7.97203703703704 71.0683703703704 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18194 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 14184 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13925 Number of spheres polar: 7144, nonpolar: 4826, out of current total: 13925 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.61860 34.60800 -21.97040 6.02460 57.07660 85.05280 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 2085 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 921 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 901 Spheres center of coords (x y z): 22.5832173140955 -6.83406370699223 74.1234734739179 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3443001469215 Final number of output spheres is: 200 Number of polar spheres: 139 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 27